PDB reading testing
The goal of this page is to examines the PDB reading and secundairy structure capabilities for the PDB files in the Jmol data repository. For the categories it lists the PDB identifier of examples for that category.
Fails to read in CDK
- 1HJE - opened with JCP
- 1CKV - practically too large to load
Reads, but CDK lacks functionality
Some things the CDK PDBReader simply cannot do.
- 1ALE - model info is not transported to Jmol
- 1PN8 - looks weird, might be OK
Reads, but connectivity messed up
Reads, but Jmol does not recognise secondary structure element
This means that the backbone is shown, and that 'select protein' is not empty. Not sure what goes wrong here. And verification with Jmol needs to be done; it might be a Jmol problem.